Livestock and environment as potential sources and reservoirs for multi-drug resistant Escherichia coli in Malaysia: A Systematic Review https://doi.org/10.12982/VIS.2024.028

Main Article Content

Habiba Lawal
Erkihun Aklilu
Nor Fadhilah Kamaruzzaman
Zarizal Suhaili
Gaddafi Mohammed Sani
Mulu Lemlem

Abstract

Pathogenic Escherichia coli (E. coli) is a significant foodborne pathogen that poses a serious global public health risk. These pathogenic strains of E. coli can be found in various environments such as soil, water, livestock, livestock products, and humans. This review aims to evaluate the role of livestock and the environment as potential sources and reservoirs of pathogenic E. coli in Malaysia over the past two decades. A systematic search was conducted on PubMed, Scopus, Web of Science, and Google Scholar databases using standardized keywords (Escherichia coli, Livestock, Abattoir workers, Farm workers, and Malaysia) to identify relevant original research articles published between 2001 and 2023 and our systematic review protocol was published in Prospero (Registration number: CRD42023433199). A total of 20 eligible articles were included in this review. The prevalence of multi-drug resistant E. coli among livestock production system and the environment, ranged from 4% to 100%. E. coli strains isolated from livestock production systems and environment in Malaysia exhibited high potential for pathogenicity, with diverse enterotoxins, genes associated with antimicrobial resistance, and virulence factors. Phylogroup B and D were noted among the E. coli isolates indicating that the strains in Malaysia are highly virulent and extra-intestinal. High levels of resistance to antimicrobials particularly ESBL and colistin which are last resort antimicrobials were noted. Butchering or processing of livestock, contamination of plants via contaminated waterways or livestock manure are the main sources and reservoir for E. coli to spread in Malaysia. Continued surveillance, monitoring and a comprehensive 'One Health' approach are recommended to effectively prevent and control livestock drug-resistant E.coli strains throughout the country.

Article Details

How to Cite
Habiba Lawal, Erkihun Aklilu, Nor Fadhilah Kamaruzzaman, Zarizal Suhaili, Gaddafi Mohammed Sani, & Mulu Lemlem. (2023). Livestock and environment as potential sources and reservoirs for multi-drug resistant Escherichia coli in Malaysia: A Systematic Review: https://doi.org/10.12982/VIS.2024.028. Veterinary Integrative Sciences, 22(2). Retrieved from https://he02.tci-thaijo.org/index.php/vis/article/view/265939
Section
Research Articles

References

Aklilu, E., Harun, A., Singh, K.K.B., 2022. Molecular characterization of blaNDM, blaOXA-48, mcr-1 and blaTEM-52 positive and concurrently carbapenem and colistin resistant and extended spectrum beta-lactamase producing Escherichia coli in chicken in Malaysia.BMC. Vet. Res. 18(1), 190.

Aklilu, E., Harun, A., Singh, K.K.B., Ibrahim, S., Kamaruzzaman, N.F., 2021. Phylogenetically diverse Escherichia coli strains from chicken coharbor multiple carbapenemaseencoding genes (bla (NDM) -bla (OXA)-blai(MP)). Biomed. Res. Int. 2021, 5596502.

Aliyu, A.B., Saleha, A.A., Jalila, A., Zunita, Z., 2016. Risk factors and spatial distribution of extended spectrum β-lactamase-producing- Escherichia coli at retail poultry meat markets in Malaysia: a cross-sectional study. BMC. Public. Health. 16, 699.

Aliyu, R.M., Abubakar, M.B., Yakubu, Y., Shuaibu, A.B., 2021. Prevalence of Escherichia coli o157: H7 in some animal products sold within Sokoto Metropolis, Nigeria. Afr. J.Microbiol. Res. 13(1), 1-6.

Apun, K., Chang, P., Sim, E., Micky, V., 2006. Clonal diversity of Escherichia coli isolates from marketed beef in East Malaysia. World. J. Microbiol. Biotechnol. 22, 661-667.

Baumann, D., Salia, H., Greune, L., Norkowski, S., Körner, B., Uckeley, Z.M., Frankel, G.,Guenot, M., Rüter, C., Schmidt, M.A., 2018. Multitalented espb of enteropathogenic Escherichia coli (Epec) enters cells autonomously and induces programmed cell death

in human monocytic Thp-1 Cells. Int. J. Med. Microbiol. 308, 387-404.

Beauchamp, C., Sofos, J., 2010. Diarrheagenic Escherichia coli. In: Juneja, V.K., Sofos, J.N.(Eds.), Pathogens and toxins in foods, ASM Press, Washington, pp. 71-94.

Chang, W., Afsah-Hejri, L., Rukayadi, Y., Khatib, A., Lye, Y., Loo, Y., Shahril, N.M., Puspanadan, S., Kuan, C., Goh, S., 2013. Quantification of Escherichia coli O157: H7 in organic vegetables and chickens. Int. Food Res. J. 20(2), 1023-1029.

Cheah, Y., Tay, L., Aida, A., Son, R., Nakaguchi, T., Nishibuchi, M., 2015. Molecular characterization of Escherichia coli isolated from different food sources. Int. Food. Res.J. 22(1), 31-40.

Chye, F.Y., Abdullah, A., Ayob, M.K., 2004. Bacteriological quality and safety of raw milk in Malaysia. Food. Microbiol. 21, 535-541.

Croxen, M.A., Law, R.J., Scholz, R., Keeney, K.M., Wlodarska, M., Finlay, B.B., 2013. Recent advances in understanding enteric pathogenic Escherichia coli. Clin. Microbiol. Rev.26, 822-880.

Devan, S.S., Aklilu, E., Hamdan, R.H., Lemlem, M., Zakaria, Z., 2022. Detection of colistinresistant Escherichia coli isolated from broiler chickens in Kelantan, Malaysia. Trop. Biomed. 39(2), 197-202.

Devan, S.S., Aklilu, E., Zakaria, Z., Hamdan, R.H., Lemlem, M., Kamaruzzaman, N.F.,Kamaruzaman, I.N.A., Reduan, M.F.H., 2023. Emergence of Mcr -1, -3, -6, -8 and -9) in Escherichia coli isolated from live chickens, raw chicken meat and vegetables from

Kelantan, Malaysia. J. Microbiol. Biotechnol. Food Sci. 12, E9829.

Ducat, W.H., Kumar, S., 2015. A systematic review of professional supervision experiences and effects for allied health practitioners working in non-metropolitan health care settings. J. Multidiscip. Healthc. 8, 397-407.

Dwiyanto, J., Hor, J.W., Reidpath, D., Su, T.T., Lee, S.W.H., Ayub, Q., Mustapha, F.B., Lee, S.M.,Foo, S.C., Chong, C.W., Rahman, S., 2022. Pan-genome and resistome analysis of extended-spectrum ß-lactamase-producing Escherichia coli: a multi-setting epidemiological surveillance study from Malaysia. PLoS. One. 17(3), e0265142.

Elmi, S.A., Simons, D., Elton, L., Haider, N., Abdel Hamid, M.M., Shuaib, Y.A., Khan, M.A.,Othman, I., Kock, R., Osman, A.Y., 2021. Identification of risk factors associated with resistant Escherichia coli isolates from poultry farms in the East Coast of Peninsular

Malaysia: a cross sectional study. Antibiotics (Basel). 10(2), 117.

Elmi, V.A., Moradi, S., Harsini, S.G., Rahimi, M., 2020. Effects of lactobacillus acidophilus and natural antibacterials on growth performance and salmonella colonization in broiler chickens challenged with salmonella enteritidis. Livest. Sci. 233, 103948.

Gaddafi, M., Yakubu, Y., Bello, M., Bitrus, A., Musawa, A., Garba, B., Lawal, H., Aliyu, M.,Barka, S., Emeka, A., 2022. Occurrence and antibiotic resistance profiles of Methicillin-Resistant (Mrsa) in layer chickens in Kebbi, Nigeria. Folia. Vet. 66, 37-45.

Gaddafi, M.S., Yakubu, Y., Junaidu, A.U., Bello, M.B., Garba, B., Bitrus, A.A., Lawal, H., 2021.Nasal colonization of pigs and farm attendants By Staphylococcus Aureus And Methicillin-Resistant Staphylococcus Aureus (Mrsa) In Kebbi, Northwestern Nigeria.

Thai. J. Vet. Med. 51, 119-124.

Ghaderpour, A., Ho, W.S., Chew, L.L., Bong, C.W., Chong, V.C., Thong, K.L., Chai, L.C., 2015. Diverse and abundant multi-drug resistant E. Coli in matang mangrove estuaries,Malaysia. Front Microbiol. 6, 977.

Ho, P., Chan, J., Lo, W., Law, P.Y., Chow, K., 2013. Plasmid-mediated fosfomycin resistance in Escherichia coli isolated from pig. Vet. Microbiol. 162, 964-967.

Hsu, L.Y., Apisarnthanarak, A., Khan, E., Suwantarat, N., Ghafur, A., Tambyah, P.A., 2017.Carbapenem-resistant acinetobacter baumannii and enterobacteriaceae in South and Southeast Asia. Clin. Microbiol. Rev. 30, 1-22.

Huijbers, P.M., Larsson, D.J., Flach, C.F., 2020. Surveillance of antibiotic resistant Escherichia coli in human populations through Urban Wastewater in ten European countries. Environ. Pollut. 261, 114200.

Ibrahim, S., Wei Hoong, L., Lai Siong, Y., Mustapha, Z., CWS, C.W.Z., Aklilu, E., Mohamad, M., Kamaruzzaman, N.F., 2021. Prevalence of antimicrobial resistance (Amr) salmonella spp. And Escherichia coli isolated from broilers in the East Coast of Peninsular Malaysia. Antibiotics (Basel). 10(5), 579.

Johnson, J.R., Russo, T.A., 2018. Molecular epidemiology of extraintestinal pathogenic Escherichia Coli. Ecosal. Plus. 8(1).

Lemlem, M., Aklilu, E., Mohammed, M., Kamaruzzaman, F., Zakaria, Z., Harun, A., Devan,S.S., 2023. Molecular detection and antimicrobial resistance profiles of extendedspectrum beta-lactamase (Esbl) producing escherichia coli in broiler chicken farms in

Malaysia. Plos One. 18, E0285743.

Lye, Y., Afsah-Hejri, L., Chang, W., Loo, Y., Puspanadan, S., Kuan, C., Goh, S., Shahril, N., Rukayadi, Y., Khatib, A., 2013. Risk of Escherichia coli O157: H7 transmission linked to the consumption of raw milk. Int. Food Res. J. 20, 1001.

Mainda, G., Bessell, P.R., Muma, J.B., McAteer, S.P., Chase-Topping, M.E., Gibbons, J., Stevens,M.P., Gally, D.L., de, C.B.B.M., 2015. Prevalence and patterns of antimicrobial resistance among Escherichia coli isolated from Zambian dairy cattle across different

production systems. Sci Rep. 5, 12439.

Manges, A., 2016. Escherichia coli and urinary tract infections: the role of poultry-meat. Clin.Microbiol. Infect. 22, 122-129.

Martinez-Medina, M., Garcia-Gil, L.J., 2014. Escherichia coli in chronic inflammatory bowel diseases: an update on adherent invasive Escherichia coli pathogenicity. World. J.Gastrointest. Pathophysiol. 5(3), 213-227.

Mohamed, M.Y.I., Abu, J., Zakaria, Z., Khan, A.R., Abdul Aziz, S., Bitrus, A.A., Habib, I., 2022. Multi-drug resistant pathogenic Escherichia coli isolated from wild birds, chicken, and the environment in Malaysia. Antibiotics. 11, 1275.

Moher, D., Shamseer, L., Clarke, M., Ghersi, D., Liberati, A., Petticrew, M., Shekelle, P.,Stewart, L.A., 2015. Preferred reporting items for systematic review and meta-analysis protocols (Prisma-P) 2015 Statement. Syst. Rev. 4, 1-9.

Nazmul, M., Salmah, I., Jamal, H., Ansary, A., 2008. Molecular characterization of verotoxin gene in enteropathogenic Escherichia coli isolated from Miri Hospital, Sarawak, Malaysia. Biomed. Res. J. 19, 9-12.

Perera, A., Clarke, C.M., Dykes, G.A., Fegan, N., 2015. Characterization of shiga toxigenic Escherichia coli O157 and Non-O157 isolates from ruminant feces in Malaysia. Biomed. Res. Int. 2015.

Radu, S., Ling, O.W., Rusul, G., Karim, M.I.A., Nishibuchi, M., 2001. Detection of Escherichia coli O157: H7 by multiplex pcr and their characterization by plasmid profiling, antimicrobial resistance, Rapd And Pfge analyses. J. Microbiol. Methods. 46, 131-139.

Sahilah, A., Nor’aishah, H., Noraida, I., Ahmad Azuhairi, A., 2010. Detection of shiga toxin 1 and 2 (stx1 and stx2) genes in Escherichia coli O157: H7 isolated from retail beef in Malaysia by multiplex polymerase chain reaction (Pcr). Sains Malays. 39, 57-63.

Santos, A.C.D.M., Santos, F.F., Silva, R.M., Gomes, T.A.T., 2020. Diversity of hybrid-and hetero-pathogenic Escherichia coli and their potential implication in more severe diseases. Front. Cell. Infect. Microbiol. 10, 339.

Simjee, S., 2007. Foodborne Pathog. Dis, Humana Press, Totowa.Sukhumungoon, P., Nakaguchi, Y., Ingviya, N., Pradutkanchana, J., Iwade, Y., Seto, K., Son, R.,Nishibuchi, M., Vuddhakul, V., 2011. Investigation of stx 2+ eae+ Escherichia Coli O157: h7 in beef imported from Malaysia to Thailand. Int. Food Res. J. 18(1), 381-386.

Tang, K.L., Caffrey, N.P., Nóbrega, D.B., Cork, S.C., Ronksley, P.E., Barkema, H.W., Polachek,A.J., Ganshorn, H., Sharma, N., Kellner, J.D., 2017. Restricting the use of antibiotics in food-producing animals and its associations with antibiotic resistance in food-producing

animals and human beings: a systematic review and meta-analysis. Lancet. Planet.Health. 1, E316-E327.

Tanih, N.F., Sekwadi, E., Ndip, R.N., Bessong, P.O., 2015. Detection of pathogenic escherichia coli and staphylococcus aureus from cattle and pigs slaughtered in abattoirs in vhembe district, south africa. ScientificWorldJournal. 2015, 195972.

Vieira, T.B., 2010. caracterização de escherichia coli isolados de miúdos e carcaça com celulite por rapd e detecção dos genes iss e fela por pcr.

Von Mentzer, A., Connor, T.R., Wieler, L.H., Semmler, T., Iguchi, A., Thomson, N.R., Rasko, D.A., Joffre, E., Corander, J., Pickard, D., 2014. Identification of enterotoxigenic Escherichia coli (Etec) clades with long-term global distribution. Nat. Genet. 46,1321-1326.

Yusuf, Y., Aliyu, M.I., Bello, S.A., Fatima, B., Abdullahi, A., Aliyu, M.D., 2020. Occurrence of methicillin resistant staphylococcus aureus (Mrsa) in some retailed animal products in Sokoto, Nigeria. Alex. J. Vet. Sci. 64(1), 135-142.