Colistin resistance and resistance determinants are mobile among Salmonella enterica isolates from diseased and healthy pigs in Thailand https://doi.org/10.12982/VIS.2026.082
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Abstract
Salmonella is an important enteric pathogen that poses a threat to human and livestock animal health, with emerging multidrug resistance (MDR) a major public health issue globally. A total of 150 fecal samples were collected from pigs housed from 4 separate pig farms in southern Thailand and tested for the presence of Salmonella. Confirmed Salmonella isolates were tested for their susceptibility to 11 antimicrobials, and PCR used to detect antimicrobial resistance genes (ARGs). Salmonella isolates were cultured from 69% (103/150) of all fecal samples, with higher prevalence in diseased pigs (12/15; 80%), compared with healthy pigs (91/135; 67%). Serotype Rissen was the most frequently identified serotype among the Salmonella isolates. Resistance to ampicillin (AMP) (97%), sulfonamide-trimethoprim (SXT) (97%), and tetracycline (TET) (94%) were the most common phenotypes observed. The most common ARGs identified were blaTEM (99%), tetA (87%), sul1 (77%), and dfrA1 (74%), and more than 95% of the Salmonella isolates tested were MDR - based on resistance to three or more antimicrobial classes. The most common antimicrobial resistance pattern exhibited was AMP-TET-SXT (76%), and resistance to colistin (via the mcr-1 gene) was observed in both healthy and diseased pigs. The clonal groups of PFGE analysis in each serotype revealed the genetic relationship among Salmonella isolated from healthy and diseased pigs from different pig farms. The pulsotype of Salmonella is clonal in both healthy and diseased pigs, providing crucial genetic evidence for the circulation of Salmonella in the area and its potential spread of MDR through the pig production chain.
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References
Ahmad, I., Malak, H.A., Abulreesh, H.H., 2021. Environmental antimicrobial resistance and its drivers: a potential threat to public health. J. Glob. Antimicrob. Resist. 27, 101–111.
Alarcón, L.V., Allepuz, A., Mateu, E., 2021. Biosecurity in pig farms: a review. Porc. Health Manag. 7(1), 5.
Alem, K., Dagnew, M., Gizachew, M., Gelaw, B., Moges, F., 2025. Environmental antimicrobial resistance: key drivers, hotspots, innovative strategies, and challenges in the fight against superbugs. MicrobiologyOpen. 14(5), e70067.
Ali, M.S., Kang, H.S., Moon, B.Y., Kim, J.I., Hwang, Y.J., Choi, J.H., Lee, Y.H., Kim, H.Y., Kim, J.M., Lim, S.K., 2026. Temporal trends in Salmonella serovar distribution and antimicrobial resistance profiles, including plasmid-mediated colistin resistance, among livestock-derived isolates in South Korea, 2019–2024Epidemiological shift and dissemination of multidrug-resistant Salmonella Infantis harboring plasmid-mediated mcr-1 in South Korean livestock, 2019-2024. Front. Microbiol. 17, 1821233.
Anuchatkitcharoen, C., Numee, S., Bender, J., Awaiwanont, N., Intanon, M., 2020. Prevalence and antimicrobial resistance of Salmonella isolated from backyard pigs in Chiang Mai, Thailand. Vet. Integr. Sci. 18(3), 193-204.
Caniça, M., Manageiro, V., Abriouel, H., Moran-Gilad, J., Franz, C.M., 2019. Antibiotic resistance in foodborne bacteria. Trends Food Sci. Technol. 84, 41-44.
Cao, Z., Xu, J., Gao, M., Li, X., Zhai, Y., Yu, K., Wan, M., Luan, X., 2020. Prevalence and antimicrobial resistance of Salmonella isolates from goose farms in Northeast China. Iran. J. Vet. Res. 21(4), 287.
Chea, B., Kong, S., Thim, S., Ban, N., Chrun, R., Venn, V., Fernandez-Colorado, C., Kang, K., 2025. Prevalence and antimicrobial resistance of Salmonella spp. isolated from swine and poultry farms in Cambodia. Vet. World. 18(4), 918-926.
CLSI, 2018. Performance Standards for Antimicrobial Susceptibility Testing. CLSI, Wayne, PA.
EFSA, 2009. Analysis of the baseline survey on the prevalence of Salmonella in holdings with breeding pigs in the EU, 2008‐Part A: Salmonella prevalence estimates. EFSA. 7(12), 1377.
Eiamsam-Ang, T., Tadee, P., Pascoe, B., Patchanee, P., 2022. Genome-based analysis of infrequent Salmonella serotypes through the Thai pork production chain. Front. Microbiol. 13, 968695.
El-Sayed Ahmed, M.A.E.-G., Zhong, L.-L., Shen, C., Yang, Y., Doi, Y., Tian, G.-B., 2020. Colistin and its role in the Era of antibiotic resistance: an extended review (2000-2019). Emerg. Microbes Infect. 9(1), 868-885.
Elbediwi, M., Shi, D., Biswas, S., Xu, X., Yue, M., 2021. Changing patterns of Salmonella enterica serovar Rissen from humans, food animals, and animal-derived foods in China, 1995–2019. Front. Microbiol. 12, 702909.
EUCAST, 2021. EUCAST clinical breakpoints and epidemiological cut-off values for the priority list of antimicrobials to be tested for Salmonella enterica. EUCAST, Växjö, Sweden.
Fazel, F., Jamshidi, A., Khoramian, B., 2019. Phenotypic and genotypic study on antimicrobial resistance patterns of E. coli isolates from bovine mastitis. Microb. Pathog. 132, 355-361.
Gashaw, Y., Asmare, Z., Tigabie, M., Sisay, A., Getatachew, E., Tadesse, S., Bitew, G., Ashagre, A., Misganaw, T., Gashaw, M., 2025. Prevalence of colistin-resistant Enterobacteriaceae isolated from clinical samples in Africa: a systematic review and meta-analysis. BMC Infect. Dis. 25(1), 437.
Gharaibeh, M.H., Shatnawi, S.Q., 2019. An overview of colistin resistance, mobilized colistin resistance genes dissemination, global responses, and the alternatives to colistin: a review. Vet. World. 12(11), 1735-1746.
Hathai, T., Yamaguchi, R., 2012. Molecular characterization of antibiotic-resistant Salmonella isolates from retail meat from markets in Northern Vietnam. J. Food Prot. 75(9), 1709-1714.
Herrera-Sánchez, M.P., Rodríguez-Hernández, R., Rondón-Barragán, I.S., 2020. Molecular characterization of antimicrobial resistance and enterobacterial repetitive intergenic consensus-PCR as a molecular typing tool for Salmonella spp. isolated from poultry and humans. Vet. World. 13(9), 1771.
Holohan, N., Wallat, M., Hai Yen Luu, T., Clark, E., Truong, D.T.Q., Xuan, S.D., Vu, H.T.K., Van Truong, D., Tran Huy, H., Nguyen-Viet, H., 2022. Analysis of antimicrobial resistance in non-typhoidal Salmonella collected from pork retail outlets and slaughterhouses in Vietnam using whole genome sequencing. Front. Vet. Sci. 9, 816279.
Ikhimiukor, O.O., Okeke, I.N., 2023. A snapshot survey of antimicrobial resistance in food-animals in low and middle-income countries. One Health. 16, 100489.
Izdebski, R., Baraniak, A., Bojarska, K., Urbanowicz, P., Fiett, J., Pomorska-Wesołowska, M., Hryniewicz, W., Gniadkowski, M., Żabicka, D., 2016. Mobile MCR-1-associated resistance to colistin in Poland. J. Antimicrob. Chemother. 71(8), 2331-2333.
Kang, X., Meng, C., Pan, Z., 2020. Molecular typing of Salmonella by pulsed-field gel electrophoresis. Methods Mol. Biol. 2182, 187-196.
Karabasanavar, N., Sivaraman, G., SP, S., Nair, A.S., Vijayan, A., Rajan, V., PS, G., 2022. Non-diarrhoeic pigs as source of highly virulent and multidrug-resistant non-typhoidal Salmonella. Braz. J. Microbiol. 53(2), 1039-1049.
Kim, S.W., Gormley, A., Jang, K.B., Duarte, M.E., 2023. Current status of global pig production: an overview and research trends. Anim. Biosci. 37(4), 719-729.
Kittiwan, N., Calland, J.K., Mourkas, E., Hitchings, M.D., Murray, S., Tadee, P., Tadee, P., Duangsonk, K., Meric, G., Sheppard, S.K., 2022. Genetic diversity and variation in antimicrobial-resistance determinants of non-serotype 2 Streptococcus suis isolates from healthy pigs. Microb. Genom. 8(11), 000882.
Lekagul, A., Kirivan, S., Kaewkhankhaeng, W., Khotchalai, S., Mader, R., Tangcharoensathien, V., 2024. Voluntary optimisation of antimicrobial consumption in swine and poultry production in Thailand: a policy analysis. Front. Vet. Sci. 11, 1375127.
Lekagul, A., Tangcharoensathien, V., Yeung, S., 2019. Patterns of antibiotic use in global pig production: a systematic review. Am. J. Anim. Vet. Sci. 7, 100058.
Lertworapreecha, M., Sutthimusik, S., Tontikapong, K., 2013. Antimicrobial resistance in Salmonella enterica isolated from pork, chicken, and vegetables in southern Thailand. Jundishapur J. Microbiol. 6(1), 36-41.
Liu, Z., Ma, S., Zhao, C., Yan, S., Zhu, L., 2025. Tenfold multiplex PCR method for simultaneous detection of mcr-1 to mcr-10 genes and application for retrospective investigations of Salmonella and Escherichia coli isolates in China. Microb. Pathog. 203, 107478.
Lu, J., Quan, J., Zhao, D., Wang, Y., Yu, Y., Zhu, J., 2018. Prevalence and molecular characteristics of mcr-1 gene in Salmonella typhimurium in a tertiary hospital of Zhejiang Province. Infect. Drug Resist. 12, 105-110.
Madhupriya, Kumar, A., Rao, G., Khurana, S., 2019. Development and utilization of gyr A and gyr B gene-based diagnostics for the phytoplasma classified under 16Sr I group in plants and insects. Biotech. 9(5), 177.
Mahmud, S., Nazir, K.N.H., Rahman, M.T., 2018. Prevalence and molecular detection of fluoroquinolone-resistant genes (qnrA and qnrS) in Escherichia coli isolated from healthy broiler chickens. Vet. World. 11(12), 1720.
Mainar-Jaime, R.C., Casanova-Higes, A., Bernad-Roche, M., Vico, J.P., Andrés-Barranco, S., 2025. Rethinking the fight against pig-related human salmonellosis in the European union. Porc. Health Manag. 11(1), 50.
Manyi-Loh, C., Mamphweli, S., Meyer, E., Okoh, A., 2018. Antibiotic use in agriculture and its consequential resistance in environmental sources: potential public health implications. Molecules. 23(4), 795.
Mmatli, M., Mbelle, N.M., Osei Sekyere, J., 2022. Global epidemiology, genetic environment, risk factors and therapeutic prospects of mcr genes: A current and emerging update. Front. Cell. Infect. Microbiol. 12, 941358.
Mondal, A.H., Khare, K., Saxena, P., Debnath, P., Mukhopadhyay, K., Yadav, D., 2024. A review on colistin resistance: an antibiotic of last resort. Microorganisms. 12(4), 772.
Mulchandani, R., Wang, Y., Gilbert, M., Van Boeckel, T.P., 2023. Global trends in antimicrobial use in food-producing animals: 2020 to 2030. PLOS glob. public health 3(2), e0001305.
Nazir, A., Nazir, A., Zuhair, V., Aman, S., Sadiq, S.U.R., Hasan, A.H., Tariq, M., Rehman, L.U., Mustapha, M.J., Bulimbe, D.B., 2025. The global challenge of antimicrobial resistance: mechanisms, case studies, and mitigation approaches. Health Sci. Rep. 8(7), e71077.
Odey, T.O.J., Tanimowo, W.O., Afolabi, K.O., Jahid, I.K., Reuben, R.C., 2024. Antimicrobial use and resistance in food animal production: food safety and associated concerns in Sub-Saharan Africa. Int. Microbiol. 27(1), 1-23.
Padungtod, P., Kaneene, J.B., 2006. Salmonella in food animals and humans in northern Thailand. Int. J. Food Microbiol. 108(3), 346-354.
Patchanee, P., Chokesajjawatee, N., Santiyanont, P., Chuammitri, P., Deeudom, M., Monteith, W., Sheppard, S.K., Pascoe, B., Prasertsee, T., 2021. Characterisation of Salmonella enterica clones carrying mcr-1 plasmids in meat products and patients in Northern Thailand using long read sequencing. Int. J. Food Microbiol. 358, 109314.
Patchanee, P., Tanamai, P., Tadee, P., Hitchings, M.D., Calland, J.K., Sheppard, S.K., Meunsene, D., Pascoe, B., Tadee, P., 2020. Whole-genome characterisation of multidrug resistant monophasic variants of Salmonella typhimurium from pig production in Thailand. PeerJ. 8, e9700.
Patra, M., Gupta, A.K., Kumar, D., Kumar, B., 2025. Antimicrobial resistance: a rising global threat to public health. Infect. Drug Resist. 18, 5419-5437.
Peng, Z., Hu, Z., Li, Z., Zhang, X., Jia, C., Li, T., Dai, M., Tan, C., Xu, Z., Wu, B., 2022. Antimicrobial resistance and population genomics of multidrug-resistant Escherichia coli in pig farms in mainland China. Nat. Comm. 13(1), 1116.
Phongaran, D., Khang-Air, S., Angkititrakul, S., 2019. Molecular epidemiology and antimicrobial resistance of Salmonella isolates from broilers and pigs in Thailand. Vet. World. 12(8), 1311-1318.
Pishtiwan, A.H., Khadija, K.M., 2019. Prevalence of blaTEM, blaSHV, and blaCTX-M genes among ESBL-producing Klebsiella pneumoniae and Escherichia coli isolated from thalassemia patients in Erbil, Iraq. Mediterr. J. Hematol. Infect. Dis. 11(1), e2019041.
Prasertsee, T., Chuammitri, P., Deeudom, M., Chokesajjawatee, N., Santiyanont, P., Tadee, P., Nuangmek, A., Tadee, P., Sheppard, S.K., Pascoe, B., 2019. Core genome sequence analysis to characterize Salmonella enterica serovar Rissen ST469 from a swine production chain. Int. J. Food Microbiol. 304, 68-74.
Prasertsee, T., Prachantasena, S., Tantitaveewattana, P., Chuaythammakit, P., Pascoe, B., Patchanee, P., 2024. Assessing antimicrobial resistance profiles of Salmonella enterica in the pork production system. J. Med. Microbiol. 73(9), 001894.
Rosager, W.N., Peter, N.J., Lind, J.S.E., Svend, H., Matthew, D., Steen, P.K., 2017. Comparison of antimicrobial resistance in E. coli isolated from rectal and floor samples in pens with diarrhoeic nursery pigs in Denmark. Prev. Vet. Med. 147, 42–49.
Salvador-Membreve, D.M., Rivera, W.L., 2021. Predominance of bla TEM and tetA genes in antibiotic-resistant Escherichia coli isolates from Laguna Lake, Philippines. J. Water Sanit. Hyg. Dev. 11(5), 814-823.
Sévellec, Y., Granier, S.A., Le Hello, S., Weill, F.-X., Guillier, L., Mistou, M.-Y., Cadel-Six, S., 2020. Source attribution study of sporadic Salmonella Derby cases in France. Front. Microbiol. 11, 889.
Sinwat, N., Angkittitrakul, S., Coulson, K.F., Pilapil, F.M.I.R., Meunsene, D., Chuanchuen, R., 2016. High prevalence and molecular characteristics of multidrug-resistant Salmonella in pigs, pork and humans in Thailand and Laos provinces. J. Med. Microbiol. 65(10), 1182-1193.
Stefaniuk, E.M., Tyski, S., 2019. Colistin resistance in Enterobacterales strains–a current view. Pol. J. Microbiol. 68(4), 417.
Tadee, P., Boonkhot, P., Patchanee, P., 2014. Quantification of contamination levels and particular risk of Salmonella spp. in pigs in slaughterhouses in Chiang Mai and Lamphun provinces, Thailand. Jpn. J. Vet. Res. 62(4), 171-179.
Tadee, P., Patchanee, P., Pascoe, B., Sheppard, S.K., Meunsene, D., Buawiratlert, T., Tadee, P., 2021. Occurrence and sequence type of antimicrobial resistant Salmonella spp. circulating in antibiotic-free organic pig farms of northern-Thailand. Thai J. Vet. Med. 51(2), 311-319.
Tanner, J.R., Kingsley, R.A., 2018. Evolution of Salmonella within hosts. Trends Microbiol. 26(12), 986-998.
Trinchera, M., De Gaetano, S., Sole, E., Midiri, A., Silvestro, S., Mancuso, G., Catalano, T., Biondo, C., 2025. Antimicrobials in livestock farming and resistance: public health implications. Antibiotics. 14(6), 606.
Trongjit, S., Angkititrakul, S., Tuttle, R.E., Poungseree, J., Padungtod, P., Chuanchuen, R., 2017. Prevalence and antimicrobial resistance in Salmonella enterica isolated from broiler chickens, pigs and meat products in Thailand-Cambodia border provinces. Microbiol. Immunol. 61(1), 23-33.
Trung, N.V., Zaw Moe, A., May Than, H., Bich Chieu, T.T., Mukarram Hossain, A.M., Trung Thanh, N., Yen, H.X., Yen, P.L.K., Nghia, N.H., Murray, G.G., 2024. Prevalence, antimicrobial resistance and genomic comparison of non-typhoidal salmonella isolated from pig farms with different levels of intensification in Yangon Region, Myanmar. PLoS One. 19(9), e0307868.
Tu, L., Hoang, N., Cuong, N., Campbell, J., Bryant, J., Hoa, N., Kiet, B., Thompson, C., Duy, D., Phat, V., 2015. High levels of contamination and antimicrobial-resistant non-typhoidal Salmonella serovars on pig and poultry farms in the Mekong Delta of Vietnam. Epidemiol. Infect. 143(14), 3074-3086.
Van Boeckel, T.P., Brower, C., Gilbert, M., Grenfell, B.T., Levin, S.A., Robinson, T.P., Teillant, A., Laxminarayan, R., 2015. Global trends in antimicrobial use in food animals. Proc. Natl. Acad. Sci. 112(18), 5649-5654.
VanderWaal, K., Deen, J., 2018. Global trends in infectious diseases of swine. Proc. Natl. Acad. Sci. 115(45), 11495-11500.
Wang, L., Li, D., 2024. Current status, challenges and prospects for pig production in Asia. Anim. Biosci. 37(4), 742-754.
Wojnarowski, K., Cholewińska, P., Zhao, D., Pacoń, J., Bodkowski, R., 2025. Antibiotic resistance genes in food animal production: environmental implications and one health challenges. Environments. 12(11), 427.
Xu, T., Xue, C.-X., Chen, Y., Huang, J., Wu, W., Lu, Y., Huang, Q., Chen, D., Zhou, K., 2022. Frequent convergence of mcr-9 and carbapenemase genes in Enterobacter cloacae complex driven by epidemic plasmids and host incompatibility. Emerg. Microbes Infect. 11(1), 1959-1972.
Xu, X., Biswas, S., Gu, G., Elbediwi, M., Li, Y., Yue, M., 2020. Characterization of multidrug resistance patterns of emerging Salmonella enterica serovar Rissen along the food chain in China. Antibiotics. 9(10), 660.
Yang, W., Phongaran, D., Prasertsee, T., Fang, R., Phuektes, P., Angkititrakul, S., 2018. Molecular epidemiology and antimicrobial resistance of Salmonella spp. isolated from broilers and pigs at slaughterhouses in Thailand and China. Thai J. Vet. Med. 48(3), 393-401.
Zeb, S., Nazir, A., Hameed, M.F., Ikram, S., Haider Naqvi, S.Z., Shoaib, M., Butaye, P., Wang, Z., Li, R., Lu, X., 2026. Colistin resistance in Gram-negative bacteria: Mechanisms, transmission, and novel intervention strategies. Microorganisms. 14(1), 173.