The Study of the Yield of DNA Extracted From Hairs of Postmortem Cases
DOI:
https://doi.org/10.33165/rmj.2020.43.2.224635Keywords:
Forensic genetics, DNA yield, DNA extracted from hairs, Phenol/ Chloroform/Isoamyl alcohol method, PCR, NanoDrop spectrophotometerAbstract
Background: Problems frequently occur from hair extraction are low concentration and impurity of DNA.
Objective: To assess the Phenol/Chloroform/Isoamyl alcohol method for extracting DNA from hair roots.
Methods: Hairs from 30 postmortem cases were collected. In each case, 5 and 10 hair roots were extracted DNA by Phenol/Chloroform/Isoamyl alcohol. The amount and purity of DNA (A260/280) were detected by NanoDrop spectrophotometer. The quality of DNA was examined using polymerase chain reaction (PCR). Amount of DNA was analyzed compared with gender, age, and manner of death.
Results: The amount and purity of DNA extracted from 10 hair roots were slightly better than 5 hair roots (P > .05). The mean (range) of DNA concentration was 200.4 (35.2 - 799.6) ng/µL from 10 hair roots vs 148.2 (21.7 - 571.5) ng/µL from 5 hair roots in 30 µL volume whereas the mean (range) of A260/280 was 1.61 (1.31 - 1.99) in 10 hair roots vs 1.54 (1.32 - 1.90) in 5 hair roots. The results from NanoDrop showed no difference among various gender, age, and manners of death.
Conclusions: DNA can be extracted from hair by Phenol/Chloroform/Isoamyl alcohol. The quantity and quality of DNA were good enough for personal identification by PCR. DNA extracted from 10 hair roots is better than 5 hair roots.
References
Seubwai W, Khunkitti W. Application of molecular biology techniques on forensic sciences. Srinagarind Med J. 2014;29(3):321-326.
Köchl S, Niederstätter H, Parson W. DNA extraction and quantitation of forensic samples using the phenol-chloroform method and real-time PCR. Methods Mol Biol. 2005;297:13-30.
Cigliero SS, Edalucci E, Fattorini P. DNA Extraction from Blood and Forensic Samples. In: Stanta G, ed. Guidelines for Molecular Analysis in Archive Tissues. Berlin, Heidelberg: Springer-Verlag; 2011:45-54.
Lee SB, Shewale JG. DNA extraction methods in forensic analysis. In: Meyers RA, ed. Encyclopedia of Analytical Chemistry. Hoboken, NJ: John Wiley & Sons; 2017:1-18. doi:10.1002/9780470027318.a1104m.pub2.
Takayanagi K, Asamura H, Tsukada K, Ota M, Saito S, Fukushima H. Investigation of DNA extraction from hair shafts. Int Congr Ser. 2003;1239:759-764. doi:10.1016/S0531-5131(02)00582-4.
Hue NT, Chan NDH, Phong PT, Linh NTT, Giang ND. Extraction of human genomic DNA from dried blood spots and hair roots. Int J Biosci Biochem Bioinforma. 2012;2(1):21-26. doi:10.7763/IJBBB.2012.V2.62.
Votrubova J, Saskova L, Dalihodova S, Vanek D. DNA extraction from forensic samples using MagCore HF 16 Plus automated nucleic acid extractor - A preliminary study. Forensic Sci Int Genet Suppl Ser. 2017;6:e150-e152. doi:10.1016/j.fsigss.2017.09.023.
Garg UC, Hanson NQ, Tsai MY, Eckfeldt JH. Simple and rapid method for extraction of DNA from fresh and cryopreserved clotted human blood. Clin Chem. 1996;42(4):647-648.
Grimberg J, Nawoschik S, Belluscio L, McKee R, Turck A, Eisenberg A. A simple and efficient non-organic procedure for the isolation of genomic DNA from blood. Nucleic Acids Res. 1989;17(20):8390. doi:10.1093/nar/17.20.8390.
Santella RM. Approaches to DNA/RNA extraction and whole genome amplification. Cancer Epidemiol Biomarkers Prev. 2006;15(9):1585-1587. doi:10.1158/1055-9965.EPI-06-0631.
Mohammadi N, Kazemi B, Roozkhosh Gh, Masoomi K, Farghadani MT. A simple, inexpensive and safe method for DNA extraction of frigid and clotted blood samples. Novel Biomed. 2015;13(3):119-123. doi:10.22037/nbm.v3i3.9507.
Green MR, Sambrook J. Chapter 2: Analysis of DNA. In: Green MR, Sambrook J, eds. Molecular Cloning: A Laboratory Manual. 4th ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press; 2012;1:81-155.
Green MR, Sambrook J. Appendix 1: Reagents and Buffers. In: Green MR, Sambrook J, eds. Molecular Cloning: A Laboratory Manual. 4th ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press; 2012;3:1811-1842.
Manitkul S. DNA Samples Collection from Whisker of Wild [master’s thesis]. Kamphaeng Saen, Nakhon Pathom; Kasetsart University; 2012.
Riemann K, Adamzik M, Frauenrath S, et al. Comparison of manual and automated nucleic acid extraction from whole-blood samples. J Clin Lab Anal. 2007;21(4):244-248. doi:10.1002/jcla.20174.