Pre-marketing Evaluation of real-time RT PCR Test Kits for SARS-CoV-2 Detection: Thailand Emergency Use Authorization

Authors

  • Don Changsom National Institute of Health, Department of Medical Sciences
  • Siriphan Saeng-aroon National Institute of Health, Department of Medical Sciences
  • Thanutsapa Thanadachakul National Institute of Health, Department of Medical Sciences
  • Thitiphorn Hantragool National Institute of Health, Department of Medical Sciences
  • Sopita Kalong National Institute of Health, Department of Medical Sciences
  • Khanthiwa Chairad National Institute of Health, Department of Medical Sciences
  • Nanthawan Mekha National Institute of Health, Department of Medical Sciences
  • Pilailuk Akkapaiboon Okada National Institute of Health, Department of Medical Sciences
  • Noppavan Janejai National Institute of Health, Department of Medical Sciences
  • Malinee Chittaganpitch Medical Sciences Technical Office, Department of Medical Sciences
  • Ballang Uppapong National Institute of Health, Department of Medical Sciences

Keywords:

SARS-CoV-2, real-time PCR, Test Kit Evaluation

Abstract

         During the outbreak of SARS-CoV-2 in Thailand, molecular testing by real-time RT-PCR was crucial for diagnosis and disease surveillance. Several commercial PCR test kits for SARS-CoV-2 diagnosis were available. Pre-marketing evaluation for Emergency Use Authorization (EUA) of those test kits was necessary for marketing in the country. The process is consisted of reviewing a dossier including a package insert and performing laboratory evaluation. The laboratory was performed using a panel of 5 positive RNA samples derived from SARS-CoV-2 cultured cells for analytical sensitivity and 5 negative SARS-CoV-2 samples for analytical specificity. All samples were extracted and serially-diluted for target gene testing, N, ORF1a/ab, E, RdRp and S, according to each test kit. A total of 41 test kits were examined. Thirty-six test kits (88%) passed the evaluation. Three (7%) and two (5%) test kits failed for analytic sensitivity and analytic specificity as compared with the target sensitivity and specificity of 80% and 99.8%, respectively. Analysis on variability of a cycle threshold (Ct) retrieved from all testing found no difference for any target genes. It is, therefore, important for laboratory personnel to carefully consider details of each test kit prior to testing for achieving accurate results.

References

World Health Organization. WHO coronavirus disease (COVID-19) dashboard. [online]. 2020; [cited 2020 Jul 14]; [7 screens]. Available from: URL: https://covid19.who.int.

Zhu N, Zhang D, Wang W, Li X, Yang B, Song J, et al. A novel coronavirus from patients with pneumonia in China, 2019. N Engl J Med 2020; 382(8): 727-33.

World Health Organization. Laboratory testing for 2019 novel coronavirus (2019-nCoV) in suspected human cases: interim guidance, 17 January 2020. [online]. 2020; [cited 2020 Jul 14]; [7 screens]. Available from: URL: https://www.who.int/publications/i/item/laboratory-testingof-2019-novel-coronavirus-(-2019-ncov)-in-suspected-human-cases-interim-guidance-17-january-2020.

World Health Organization. Molecular assays to diagnose COVID-19: summary table of available protocols. [online]. 2020; [cited 2020 Jul 14]; [80 screens]. Available from: URL: https://www.who.int/publications/m/item/molecular-assays-to-diagnose-covid-19-summary-tableof-available-protocols.

Corman VM, Landt O, Kaiser M, Molenkamp R, Meijer A, Chu DK, et al. Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR. Euro Surveill 2020; 25(3): 2000045. (8 pages).

Konrad R, Eberle U, Dangel A, Treis B, Berger A, Bengs K, et al. Rapid establishment of laboratory diagnostics for the novel coronavirus SARS-CoV-2 in Bavaria, Germany, February 2020. Euro Surveill 2020; 25(9): 2000173. (5 pages).

Chan JF, Yip CC, To KK, Tang TH, Wong SC, Leung KH, et al. Improved molecular diagnosis of COVID-19 by the novel, highly sensitive and specific COVID-19-RdRp/Hel real-time reverse transcription-polymerase chain reaction assay validated in vitro and with clinical specimens. J Clin Microbiol. 2020; 58(5): e00310-20. (10 pages).

ประกาศสำนักงานคณะกรรมการอาหารและยา เรื่อง การยื่นคำขอประเมิน การประเมิน และการออกใบรับรองการประเมินชุดตรวจและน้ำยาที่เกี่ยวข้องกับการวินิจฉัยการติดเชื้อ SARS-CoV-2 (เชื้อก่อโรค COVID-19) พ.ศ. 2563. ราชกิจจานุเบกษา เล่ม 107 ตอนพิเศษ 107 ง (วันที่ 5 พฤษภาคม 2563). หน้า 26-27.

Okada P, Buathong R, Phuygun S, Thanadachakul T, Parnmen S, Wongboot W, et al. Early transmission patterns of coronavirus disease 2019 (COVID-19) in travellers from Wuhan to Thailand, January 2020. Euro Surveill 2020; 25(8):2000097. (5 pages).

Pastorino B, Touret F, Gilles M, de Lamballerie X, Charrel RN. Heat inactivation of different types of SARS-CoV-2 samples: What protocols for biosafety, molecular detection and serological diagnostics? Viruses 2020; 12(7): E735. (8 pages).

U.S. Food and Drug Administration. Policy for coronavirus disease-2019 tests during the public health emergency (revised): immediately in effect guidance for clinical laboratories, commercial manufacturers, and Food and Drug Administration staff. [online]. 2020; [cited 2020 Jul 14]; [20 screens]. Available from: URL: https://www.fda.gov/regulatory-information/search-fdaguidance-documents/policy-coronavirus-disease-2019-tests-during-public-healthemergency-revised.

Bundesamt für Verbraucherschutz und Lebensmittelsicherheit (BVL). Guidelines for the validation of qualitative real-time PCR methods by means of a collaborative study. [online]. 2016; [cited 2020 Jul 14]; [17 screens]. Available from: URL: https://www.bvl.bund.de/SharedDocs/Downloads/07_Untersuchungen/Guidelines%20for%20the%20validation%20of%20qualitative.pdf?__blob=publicationFile&v=3.

Kim MN, Ko YJ, Seong MW, Kim JS, Shin BM, Sung H. Analytical and clinical validation of six commercial Middle East Respiratory Syndrome coronavirus RNA detection kits based on real-time reverse-transcription PCR. Ann Lab Med 2016; 36(5): 450-6.

Pan Y, Zhang D, Yang P, Poon LLM, Wang Q. Viral load of SARS-CoV-2 in clinical samples. Lancet Infect Dis 2020; 20(4): 411-2.

Rutledge RG, Stewart D. Critical evaluation of methods used to determine amplification efficiency refutes the exponential character of real-time PCR. BMC Mol Biol 2008; 9: 96. (12 pages).

Life Technologies Corporation. Real-time PCR handbook. [online]. 2012; [cited 2020 Jul 14]; [70 screens]. Available from: URL: https://www.gene-quantification.de/real-time-pcrhandbook-life-technologies-update-flr.pdf.

Downloads

Published

25-09-2020

How to Cite

1.
Changsom D, Saeng-aroon S, Thanadachakul T, Hantragool T, Kalong S, Chairad K, Mekha N, Akkapaiboon Okada P, Janejai N, Chittaganpitch M, Uppapong B. Pre-marketing Evaluation of real-time RT PCR Test Kits for SARS-CoV-2 Detection: Thailand Emergency Use Authorization. ว กรมวิทย พ [internet]. 2020 Sep. 25 [cited 2025 Dec. 28];62(3):205-19. available from: https://he02.tci-thaijo.org/index.php/dmsc/article/view/245915

Issue

Section

General Articles